BlindPTM

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How to run blindPTM

1. After search, run DTASelect with--modstat, --trypstat, -p 1, -DM 10, -in, and –t 0 options
2. Run prepareblindptmsearch in search folder and move identified.fasta from identified folder to search folder
3. Download search.xml.blindptm 4. Change search.xml.blindptm file
Designate residues for modification with “<diffmod> <residue>”
Designate modification mass window
<precursor_high>750000</precursor_high> 750 Da
<precursor_low>-100000</precursor_low> 100 Da
5. Rename search.xml and place in /identified folder
6. Run submit_blindptm